Modifier and Type | Method and Description |
---|---|
OntologyDatabase |
JDBCDatabaseInstance.getOntologyDatabase() |
abstract OntologyDatabase |
DatabaseInstance.getOntologyDatabase() |
Constructor and Description |
---|
Node(OntologyDatabase db,
NodeDescriptor node)
Constructor of the Node class.
|
Node(OntologyDatabase db,
NodeHandle handle,
Collection<NodeName> names)
Constructor of the Node class.
|
Node(OntologyDatabase db,
NodeHandle handle,
Collection<NodeName> names,
boolean root)
Constructor of the Node class.
|
Node(OntologyDatabase db,
NodeHandle handle,
NodeName name)
Constructor of the Node class.
|
Node(OntologyDatabase db,
NodeHandle handle,
NodeName name,
boolean root)
Constructor of the Node class.
|
Node(OntologyDatabase db,
NodeHandle handle,
String name)
Constructor of the Node class.
|
Node(OntologyDatabase db,
NodeHandle handle,
String name,
boolean root)
Constructor of the Node class.
|
Node(OntologyDatabase db,
OntologyHandle handle,
int id,
Collection<NodeName> names)
Constructor of the Node class.
|
Node(OntologyDatabase db,
OntologyHandle handle,
int id,
Collection<NodeName> names,
boolean root)
Constructor of the Node class.
|
Node(OntologyDatabase db,
OntologyHandle handle,
int id,
NodeName name)
Constructor of the Node class.
|
Node(OntologyDatabase db,
OntologyHandle handle,
int id,
NodeName name,
boolean root)
Constructor of the Node class.
|
Node(OntologyDatabase db,
OntologyHandle handle,
int id,
String name)
Constructor of the Node class.
|
Node(OntologyDatabase db,
OntologyHandle handle,
int id,
String name,
boolean root)
Constructor of the Node class.
|
Constructor and Description |
---|
DictionaryNameFinder(OntologyDatabase db,
String documentText,
double pThresh,
SyntacticProbabilityModel model)
Creates a new instance of the DictionaryNameFinder class and connects it
to the given database and the given probability model.
|
Modifier and Type | Field and Description |
---|---|
protected OntologyDatabase |
AbstractImporter.db
Reference to the ontology database into which the data will be imported.
|
Constructor and Description |
---|
AbstractImporter(OntologyDatabase db,
String ontologyName)
Instantiates the importer for the given database.
|
Constructor and Description |
---|
DrugBankImporter(OntologyDatabase db)
Instanciates the importer for the given database.
|
Constructor and Description |
---|
MeshImporter(OntologyDatabase db)
Instanciates the importer for the given database.
|
MeshImporter2(OntologyDatabase db)
Instanciates the importer for the given database.
|
Constructor and Description |
---|
NCBIImporter(OntologyDatabase db)
Instanciates the importer for the given database.
|
Modifier and Type | Method and Description |
---|---|
void |
AssociationList.flush(OntologyDatabase db,
OntologyHandle onto) |
Constructor and Description |
---|
SmallImporter(OntologyDatabase db,
String ontologyName) |
Copyright (C) 2013, 2014 Raphael Dickfelder, Jan Göpfert, Benjamin Paassen, Andreas Stöckel, licensed under the AGPL v. 3: http://openresearch.cit-ec.de/projects/scie