Package | Description |
---|---|
de.unibi.citec.tcs.alignment |
This package contains the actual AlignmentAlgorithms as well as their return
classes.
|
de.unibi.citec.tcs.alignment.sequence |
This package contains the definition of input Sequences for
AlignmentAlgorithms.
|
de.unibi.citec.tcs.alignment.visualization |
Modifier and Type | Method and Description |
---|---|
Node |
Operation.getLeft() |
Node |
Operation.getRight() |
Modifier and Type | Method and Description |
---|---|
static double |
SoftDTWModel.calc_weighted_comp_sum(Comparator[] comparators,
double[] weights,
int[] originalIndices,
Node nodeX,
Node nodeY)
Returns weighted sum k of local comparators: k = sum(w_i * k_i) with:
k_i: local comparators w_i: local weights
Note: Comparators, weights, originalIndices are supposed to originate
from the same AlignmentSpecification.
|
static double[] |
AbstractGapAlignmentAlgorithm.calculateDeletionCosts(Node a,
AlignmentSpecification specification)
This calculates the non-weighted costs for deleting the single values in
node a.
|
static double[] |
AbstractGapAlignmentAlgorithm.calculateInsertionCosts(Node b,
AlignmentSpecification specification)
This calculates the non-weighted costs for inserting the single values of
node b.
|
static double[] |
AbstractGapAlignmentAlgorithm.calculateReplacementCosts(Node a,
Node b,
AlignmentSpecification specification)
This calculates the non-weighted costs for replacing the single values in
node a by the values in node b.
|
Constructor and Description |
---|
Operation(Node left,
Node right,
OperationType type,
AlignmentPath path)
This constructs an Operation within an AlignmentPath.
|
Modifier and Type | Method and Description |
---|---|
ArrayList<Node> |
Sequence.getNodes()
Returns the actual list of nodes.
|
Modifier and Type | Method and Description |
---|---|
String |
SpecialHTMLTransformer.getHTMLforNode(Node node)
Transforms the given node into HTML content for the visualization.
|
abstract String |
AbstractSpecialHTMLTransformer.getHTMLforNode(Node node)
Transforms the given node into HTML content for the visualization.
|
abstract String |
AbstractHTMLTransformerFromPath.getHTMLforNode(Node node) |
String |
HTImageFromPath.getHTMLforNode(Node node)
Takes an image file from the given node and generates a
corresponding HTML representation.
|
String |
PartStringFromFileExternalContent.getHTMLforNode(Node node) |
String |
HTPartStringFromPath.getHTMLforNode(Node node)
Takes some code positions from the given node and extracts the
corresponding string from a file specified by 'SourceCodeFile'
in the node.
|
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