Package | Description |
---|---|
de.unibi.citec.tcs.alignment.comparators |
This package contains comparators that define distances between Values.
|
de.unibi.citec.tcs.alignment.sequence |
This package contains the definition of input Sequences for
AlignmentAlgorithms.
|
de.unibi.citec.tcs.alignment.wrappers |
Modifier and Type | Method and Description |
---|---|
Alphabet |
ReplacementCosts.getAlphabet() |
Constructor and Description |
---|
ReplacementCosts(Alphabet alphabet,
boolean supportsGaps,
boolean supportsSkips)
Initializes an empty replacement score matrix with sensible defaults: The
diagonal is set to 0 (it costs nothing to replace a symbol by itself),
every other replacement is set to MISMATCHDEFAULT, gap costs are set to
GAPDEFAULT and skip costs to SKIPDEFAULT.
|
ReplacementCosts(Alphabet alphabet,
double[][] costMatrix) |
Modifier and Type | Method and Description |
---|---|
Alphabet |
SymbolicValue.getAlphabet()
Returns the Alphabet that defines which symbols are allowed for this
keyword.
|
Alphabet |
SymbolicKeywordSpecification.getAlphabet()
Returns the Alphabet that defines which symbols are allowed for this
keyword.
|
Constructor and Description |
---|
Sequence(String sequenceString,
Alphabet alphabet)
Sets up a trivial sequence with only one keyword (DEFAULTKEYWORD) and treats
the string content between | delimiters in the input string as symbolic
values.
|
SymbolicKeywordSpecification(Alphabet alphabet,
String keyword) |
SymbolicValue(Alphabet alphabet) |
SymbolicValue(Alphabet alphabet,
String symbol) |
Modifier and Type | Method and Description |
---|---|
static Sequence[] |
StringEditDistance.toSequences(Collection<String> strings,
Alphabet alphabet)
Transforms the given strings to the TCSAlignmentToolbox Sequence format
using the given alphabet.
|
static Sequence[] |
StringEditDistance.toSequences(String[] strings,
Alphabet alphabet)
Transforms the given strings to the TCSAlignmentToolbox Sequence format
using the given alphabet.
|
Copyright © 2014. All rights reserved.