Package | Description |
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de.citec.tcs.alignment.comparators |
This module defines the interfaces for Comparators in the TCS Alignment Toolbox.
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de.citec.tcs.alignment.wrappers |
This module contains some wrappers to make usage of the
TCSAlignmentToolbox easier.
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Constructor and Description |
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AlignmentSpecification(AlignmentSpecification other)
Constructs a copy of the given other AlignmentSpecification.
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Modifier and Type | Method and Description |
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static AlignmentSpecification |
RandomSequenceGenerator.generateSpecification(int K)
This generates an AlignmentSpecification and implicitly a
NodeSpecification for K keywords.
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static AlignmentSpecification |
StringEditDistance.setUpSpecification(Sequence[] dataSpace)
Sets up a default AlignmentSpecification for the simple
StringEditDistance problem.
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static AlignmentSpecification |
VectorialSequences.setUpSpecification(Sequence[] dataSpace)
Sets up an AlignmentSpecification for an array of vectorial sequences.
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static AlignmentSpecification |
VectorialSequences.setUpSpecification(Sequence[] dataSpace,
double[] weights)
Sets up an AlignmentSpecification for an array of vectorial sequences.
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static AlignmentSpecification |
StringEditDistance.setUpSpecification(Sequence[] dataSpace,
double[][] scoringScheme)
Sets up an AlignmentSpecification for the simple
StringEditDistance problem.
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static AlignmentSpecification |
StringEditDistance.setUpSpecification(Sequence[] dataSpace,
double matchCost,
double mismatchCost,
double gapCost,
double skipCost)
Sets up an AlignmentSpecification for the simple
StringEditDistance problem.
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static AlignmentSpecification |
VectorialSequences.setUpSpecification(Sequence[] dataSpace,
ValueComparator comparator)
Sets up an AlignmentSpecification for an array of vectorial sequences.
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static AlignmentSpecification |
VectorialSequences.setUpSpecification(Sequence[] dataSpace,
ValueComparator[] comparators)
Sets up an AlignmentSpecification for an array of vectorial sequences.
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static AlignmentSpecification |
VectorialSequences.setUpSpecification(Sequence[] dataSpace,
ValueComparator[] comparators,
double[] weights)
Sets up an AlignmentSpecification for an array of vectorial sequences.
|
static AlignmentSpecification |
VectorialSequences.setUpSpecification(Sequence[] dataSpace,
ValueComparator comparator,
double[] weights)
Sets up an AlignmentSpecification for an array of vectorial sequences.
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Copyright (C) 2016-2018 Benjamin Paaßen, AG Theoretical Computer Science, Centre of Excellence Cognitive Interaction Technology (CITEC), University of Bielefeld, licensed under the AGPL v. 3: http://openresearch.cit-ec.de/projects/tcs . This documentation is licensed under the conditions of CC-BY-SA 4.0: https://creativecommons.org/licenses/by-sa/4.0/